Tutorials

Here are pre-built tutorials that are designed to guide you through some high-level features and functions built in the package.

• Tutorial 1 - Getting started with data
  • Creating an experiment - UPDATED Oct 23 2022
  • Adding trials to an experiment
  • Adding calcium imaging processing to Experiment
  • Storing Suite2p processed data as an anndata structure
• Tutorial 2 - Data organization inside Imaging+
  • Importing data analysis objects
  • paq data
  • Suite2p data
  • Annotated Data
• Tutorial 3 - Making Useful Plots
  • import data
• Tutorial 4 - NWB Conversion
• Tutorial 5 - Integrating with Suite2p (running Suite2p pipeline and storing results)
  • Adding the Suite2p module
  • Prepare for Suite2p run
  • Run Suite2p
  • Import suite2p results directly
• Tutorial 6 - Annotated Data Module
  • storage of Flu data
  • observations (Suite2p ROIs metadata and associated processing info)
  • variables (temporal synchronization of paq channels and imaging)
• Tutorial 7 - Integration with PACKIO outputs (.paq data)
  • adding paqdata module to the trialobj
  • Processing paq data
  • Synchronizing .paq data with imaging frames
• Tutorial 8 - Extending built in classes
  • Creating a custom class for Interneuron Gcamp imaging during seizures