Quick Start Guide¶
The easiest way to get started with using imaging+ is to follow Tutorial 1 - Getting started with data.
This tutorial demonstrates how to setup a new experiment inside imaging+ for data processing and analysis.
To get started with plotting and data exploration, check out Tutorial 3 - Making useful plots.
Key Structures¶
There are two core data objects for storing experimental data:
Experiment - built from constituent ImagingTrial objects, and represents the overall experiment.
ImagingTrial - a calcium imaging trial at a single field of view.
And, there 3 sub-core data types to handle multi-modal data within each imaging trial:
ImagingData - live imaging data
TemporalData - 1D time series data temporally synchronized to live imaging data
CellAnnotations - Annotations and cellular/ROI segmentations of the live imaging tissue sample
A more detailed overview of these modules and other key structures of imaging+ can be found at Core structures.
An overview of all primary modules of imaging+ can be found at Main Modules.
Next¶
Data structure details